Data Category emd_modelling

General

Category name
emd_modelling
Required in PDB entries
no
Category group membership
emd_group
Used in current PDB entries
No

Category Relationship Diagrams

70
View full category relationship diagram including all dictionary data categories

Category Description

     Data items record details of the method of fitting atomic
     coordinates from a PDB file into a 3d-em volume map file

Category Example

 
   _emd_modelling.id                      1
   _emd_modelling.refinement_protocol     'FLEXIBLE FIT'
   _emd_modelling.target_criteria         'map-derived potential energy'
   _emd_modelling.overall_b_value         .
   _emd_modelling.ref_space               REAL
   _emd_modelling.details
   ;A complete ternary complex model was generated by rigid-body fitting of
    multiple PDB entries, followed with a homology modelling step for RNAP.
    The model geometry was regularized with PHENIX and then refined against
    the EM map with Yup.scx using default parameters.
   ;

Key Data Items