Data Category entity_src_gen

General

Category name
entity_src_gen
Required in PDB entries
no
Category group membership
entity_group
Used in current PDB entries
Yes, in about 85.9 % of entries

Category Relationship Diagrams

70
View full category relationship diagram including all dictionary data categories
70
View abbreviated category relationship diagram including only those categories used in current PDB entries.

Category Description

               Data items in the ENTITY_SRC_GEN category record details of
               the source from which the entity was obtained in cases
               where the source was genetically manipulated.  The
               following are treated separately:  items pertaining to the tissue
               from which the gene was obtained, items pertaining to the host
               organism for gene expression and items pertaining to the actual
               producing organism (plasmid).

Category Example

 
    loop_
    _entity_src_gen.entity_id
    _entity_src_gen.pdbx_src_id
    _entity_src_gen.gene_src_common_name
    _entity_src_gen.gene_src_genus
    _entity_src_gen.gene_src_species
    _entity_src_gen.gene_src_strain
    _entity_src_gen.host_org_common_name
    _entity_src_gen.host_org_genus
    _entity_src_gen.host_org_species
    _entity_src_gen.plasmid_name
     1  1 'HIV-1'  '?'  '?'  'NY-5'
        'bacteria'  'Escherichia'  'coli'  'pB322'

Category Data Items