Data items in the REFINE_TLS category record details about
TLS parameters used in structure refinement. Note that the
intention is primarily to describe directly refined TLS
parameters, although other methods of obtaining TLS parameters
may be covered, see item attribute method in category ccp4_refine_tls
The [1][1] element of the libration tensor L. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute L[1][1] in category ccp4_refine_tls.
The [1][2] element of the libration tensor L. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute L[1][2] in category ccp4_refine_tls.
The [1][3] element of the libration tensor L. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute L[1][3] in category ccp4_refine_tls.
The [2][2] element of the libration tensor L. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute L[2][2] in category ccp4_refine_tls.
The [2][3] element of the libration tensor L. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute L[2][3] in category ccp4_refine_tls.
The [3][3] element of the libration tensor L. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute L[3][3] in category ccp4_refine_tls.
The [1][1] element of the screw-rotation tensor S. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
The trace of S is indeterminate by crystallography, and should
be set to zero.
The estimated standard deviation of attribute S[1][1] in category ccp4_refine_tls.
The [1][2] element of the screw-rotation tensor S. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
If the origin is omitted, it is assumed to be the centre of
reaction of the group, in which case S must be symmetric
The estimated standard deviation of attribute S[1][2] in category ccp4_refine_tls.
The [1][3] element of the screw-rotation tensor S. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
If the origin is omitted, it is assumed to be the centre of
reaction of the group, in which case S must be symmetric
The estimated standard deviation of attribute S[1][3] in category ccp4_refine_tls.
The [2][1] element of the screw-rotation tensor S. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
If the origin is omitted, it is assumed to be the centre of
reaction of the group, in which case S must be symmetric
The estimated standard deviation of attribute S[2][1] in category ccp4_refine_tls.
The [2][2] element of the screw-rotation tensor S. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
The trace of S is indeterminate by crystallography, and should
be set to zero.
The estimated standard deviation of attribute S[2][2] in category ccp4_refine_tls.
The [2][3] element of the screw-rotation tensor S. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
If the origin is omitted, it is assumed to be the centre of
reaction of the group, in which case S must be symmetric
The estimated standard deviation of attribute S[2][3] in category ccp4_refine_tls.
The [3][1] element of the screw-rotation tensor S. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
If the origin is omitted, it is assumed to be the centre of
reaction of the group, in which case S must be symmetric
The estimated standard deviation of attribute S[3][1] in category ccp4_refine_tls.
The [3][2] element of the screw-rotation tensor S. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
If the origin is omitted, it is assumed to be the centre of
reaction of the group, in which case S must be symmetric
The estimated standard deviation of attribute S[3][2] in category ccp4_refine_tls.
The [3][3] element of the screw-rotation tensor S. This should
be given in the same coordinate frame as the
corresponding anisotropic displacement parameters.
The trace of S is indeterminate by crystallography, and should
be set to zero.
The estimated standard deviation of attribute S[3][3] in category ccp4_refine_tls.
The [1][1] element of the translation tensor T. This should
be given in the same coordinate frame and units as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute T[1][1] in category ccp4_refine_tls.
The [1][2] element of the translation tensor T. This should
be given in the same coordinate frame and units as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute T[1][2] in category ccp4_refine_tls.
The [1][3] element of the translation tensor T. This should
be given in the same coordinate frame and units as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute T[1][3] in category ccp4_refine_tls.
The [2][2] element of the translation tensor T. This should
be given in the same coordinate frame and units as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute T[2][2] in category ccp4_refine_tls.
The [2][3] element of the translation tensor T. This should
be given in the same coordinate frame and units as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute T[2][3] in category ccp4_refine_tls.
The [3][3] element of the translation tensor T. This should
be given in the same coordinate frame and units as the
corresponding anisotropic displacement parameters.
The estimated standard deviation of attribute T[3][3] in category ccp4_refine_tls.
A description of the TLS group, such as a domain name or a
chemical group name.
Chain A catalytic domain
Chain A Tyr 56 side chain
The method by which the TLS parameters were obtained.
The x coordinate in angstroms of the origin to which the
TLS parameters are referred, specified according to
a set of orthogonal Cartesian axes related to the cell axes as
given in attribute Cartn_transform_axes.
in category atom_sites
If the origin is omitted, it is assumed to be the centre of
reaction of the group, in which case S must be symmetric
The y coordinate in angstroms of the origin to which the
TLS parameters are referred, specified according to
a set of orthogonal Cartesian axes related to the cell axes as
given in attribute Cartn_transform_axes.
in category atom_sites
If the origin is omitted, it is assumed to be the centre of
reaction of the group, in which case S must be symmetric
The z coordinate in angstroms of the origin to which the
TLS parameters are referred, specified according to
a set of orthogonal Cartesian axes related to the cell axes as
given in attribute Cartn_transform_axes.
in category atom_sites
If the origin is omitted, it is assumed to be the centre of
reaction of the group, in which case S must be symmetric
The value of attribute id in category ccp4_refine_tls must uniquely identify a record in
the CCP4_REFINE_TLS list.
Note that this item need not be a number; it can be any unique
identifier.
1
A
Data items in the CCP4_REFINE_TLS_GROUP category record details about
a fragment of a TLS group.
Properties of the TLS group are recorded in CCP4_REFINE_TLS
A component of the identifier for the residue at which the
TLS fragment range begins.
This data item is a pointer to attribute auth_seq_id in category atom_site in the
ATOM_SITE category.
1
5A
A component of the identifier for the residue at which the
TLS fragment range begins.
This data item is a pointer to attribute label_asym_id in category atom_site in the
ATOM_SITE category.
O
2B3
A component of the identifier for the residue at which the
TLS fragment range begins.
This data item is a pointer to attribute label_seq_id in category atom_site in the
ATOM_SITE category.
1
303
A component of the identifier for the residue at which the
TLS fragment range ends.
This data item is a pointer to attribute auth_seq_id in category atom_site in the
ATOM_SITE category.
1
5A
A component of the identifier for the residue at which the
TLS fragment range ends.
This data item is a pointer to attribute label_asym_id in category atom_site in the
ATOM_SITE category.
O
2B3
A component of the identifier for the residue at which the
TLS fragment range ends.
This data item is a pointer to attribute label_seq_id in category atom_site in the
ATOM_SITE category.
1
303
This data item is a pointer to attribute id in category ccp4_refine_tls in the
REFINE_TLS category.
A description of the subset of atoms in the specified
range included in the TLS fragment.
The value of attribute id in category ccp4_refine_tls_group must uniquely identify
a record in the REFINE_TLS_GROUP list.
Note that this item need not be a number; it can be any unique
identifier.
1
A