PDBx/mmCIF
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Data Category pdbx_modification_feature

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General

Category name
pdbx_modification_feature
Required in PDB entries
no
Category group membership
struct_group
Used in current PDB entries
No

Category Relationship Diagrams

70
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Category Description 

               Data items in the PDBX_MODIFICATION_FEATURE category provides 
               information about all the protein modifications that have been 
               modeled in the entry.

Category Examples

2

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Category Example1

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    loop_
    _pdbx_modification_feature.ordinal
    _pdbx_modification_feature.label_comp_id
    _pdbx_modification_feature.label_asym_id
    _pdbx_modification_feature.label_seq_id
    _pdbx_modification_feature.label_alt_id
    _pdbx_modification_feature.modified_residue_label_comp_id
    _pdbx_modification_feature.modified_residue_label_asym_id
    _pdbx_modification_feature.modified_residue_label_seq_id
    _pdbx_modification_feature.modified_residue_label_alt_id
    _pdbx_modification_feature.auth_comp_id
    _pdbx_modification_feature.auth_asym_id
    _pdbx_modification_feature.auth_seq_id
    _pdbx_modification_feature.PDB_ins_code
    _pdbx_modification_feature.symmetry
    _pdbx_modification_feature.modified_residue_auth_comp_id
    _pdbx_modification_feature.modified_residue_auth_asym_id
    _pdbx_modification_feature.modified_residue_auth_seq_id
    _pdbx_modification_feature.modified_residue_PDB_ins_code
    _pdbx_modification_feature.modified_residue_symmetry
    _pdbx_modification_feature.comp_id_linking_atom
    _pdbx_modification_feature.modified_residue_id_linking_atom
    _pdbx_modification_feature.modified_residue_id
    _pdbx_modification_feature.ref_pcm_id
    _pdbx_modification_feature.ref_comp_id
    _pdbx_modification_feature.type
    _pdbx_modification_feature.category
    _pdbx_modification_feature.biological_function
    _pdbx_modification_feature.biological_function_details
    1 SEP A 65 ? .   . .  . SEP A 65 ? 1_555 .   . .  . .     .  .  SER 1 SEP Phosphorylation 'Named protein modification' ? ?
    2 SEP B 65 ? .   . .  . SEP B 65 ? 1_555 .   . .  . .     .  .  SER 1 SEP Phosphorylation 'Named protein modification' ? ?
    3 CYS A 46 ? CYS B 46 ? CYS A 46 ? 1_555 CYS B 46 ? 1_555 SG SG .   . .   None            'Disulfide bridge'           ? ?

Category Example2

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    loop_
    _pdbx_modification_feature.ordinal
    _pdbx_modification_feature.label_comp_id
    _pdbx_modification_feature.label_asym_id
    _pdbx_modification_feature.label_seq_id
    _pdbx_modification_feature.label_alt_id
    _pdbx_modification_feature.modified_residue_label_comp_id
    _pdbx_modification_feature.modified_residue_label_asym_id
    _pdbx_modification_feature.modified_residue_label_seq_id
    _pdbx_modification_feature.modified_residue_label_alt_id
    _pdbx_modification_feature.auth_comp_id
    _pdbx_modification_feature.auth_asym_id
    _pdbx_modification_feature.auth_seq_id
    _pdbx_modification_feature.PDB_ins_code
    _pdbx_modification_feature.symmetry
    _pdbx_modification_feature.modified_residue_auth_comp_id
    _pdbx_modification_feature.modified_residue_auth_asym_id
    _pdbx_modification_feature.modified_residue_auth_seq_id
    _pdbx_modification_feature.modified_residue_PDB_ins_code
    _pdbx_modification_feature.modified_residue_symmetry
    _pdbx_modification_feature.comp_id_linking_atom
    _pdbx_modification_feature.modified_residue_id_linking_atom
    _pdbx_modification_feature.modified_residue_id
    _pdbx_modification_feature.ref_pcm_id
    _pdbx_modification_feature.ref_comp_id
    _pdbx_modification_feature.type
    _pdbx_modification_feature.category
    _pdbx_modification_feature.biological_function
    _pdbx_modification_feature.biological_function_details
    1 CSO C 32 ? .   . .  . CSO C 32   ? 1_555 .   . .  . .     .  .  CYS 1 CSO Hydroxylation  'Named protein modification' ? ?
    2 CSO D 32 ? .   . .  . CSO D 32   ? 1_555 .   . .  . .     .  .  CYS 1 CSO Hydroxylation  'Named protein modification' ? ?
    3 PLM E .  ? CYS A 82 ? PLM A 1068 ? 1_555 CYS A 68 ? 1_555 C1 SG CYS 6 PLM Palmitoylation Lipid/lipid-like             ? ?
    4 PLM F .  ? CYS B 82 ? PLM B 1068 ? 1_555 CYS B 68 ? 1_555 C1 SG CYS 6 PLM Palmitoylation Lipid/lipid-like             ? ?

Key Data Items

Category Data Items

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